PAAVEL, KANGRO, ARST, REINART, KUTSER, and NÕGES: Parameterization of Chlorophyll-Specific Phytoplankton Absorption Coefficients for Productive Lake Waters

Parameterization of Chlorophyll-Specific Phytoplankton Absorption Coefficients for Productive Lake Waters


We examined and parameterized chlorophyll-specific phytoplankton absorption coefficients [a ph(λ)] for three turbid productive Estonian lakes on the basis of bio-optical measurements in 2005-2013. A new model parameterization was created that enables to reconstruct the spectra of aph(λ) for turbid productive waters with the higher reliability than previous parameterizations for ocean and coastal waters. The coefficients A(λ) and B(λ) of our model differ from those found in seas, coastal waters and other types of lakes. For any water type separately the increase of total chlorophyll concentration accompanied with the decrease of a *ph. Our results showed significant seasonal differences between the model parameters due to diversity of the phytoplankton assemblages This suggests that season-specific models should be developed and validated. Improving the modelling of chlorophyll-specific phytoplankton absorption spectra for hypertrophic lakes is still pending on the availability of a larger dataset, which includes simultaneous measurements of chlorophyll concentrations, phytoplankton absorption coefficients and phytoplankton species composition. Our results implied that total chlorophyll concentration is not a universal predictor of the magnitude of chlorophyll-specific phytoplankton absorption coefficient. The a ph(λ) models are also likely site and season dependent. Further research is needed for quantifying the role of accessory pigments and other optical constituents as well as the cell size of dominant algal species for considering their influence on the modelling outputs.


The underwater light climate is formed as a result of the absorption and scattering of light by optically active constituents: phytoplankton, coloured dissolved organic matter, non-algal particles and water itself. Knowledge of phytoplankton absorption and its dependence on the concentration of chlorophyll-a as well as accessory pigments is fundamental in the refinement of bio-optical models (Arst and Kutser, 1994; Garver and Siegel, 1997; Kutser et al, 2001; Lee and Carder, 2004; Smyth et al, 2006; Pan et al, 2008; Binding et al, 2012). The bio-optical models are used in studying underwater light field but are primarily used in interpretation of remote sensing data. Many authors use the models to develop different band-ratio type algorithms (as collection sufficient amount of in situ data is too time consuming and expensive), but model inversion techniques retrieving chlorophyll-a, coloured dissolved organic matter (CDOM) and suspended matter concentration simultaneously are becoming more and more popular in aquatic remote sensing.

The chlorophyll-specific phytoplankton absorption coefficient [a*ph(λ) - the amount of light absorbed by a unit of pigment quantity at different wavelengths] provides also information on phytoplankton community structure and is regarded as a key input parameter in primary production models (Longhurst et al, 1995; Westberry et al, 2005; Arst et al, 2008).

Decades of field studies have shown that a*ph(λ) decreases with increasing chlorophyll concentrations due to the combined influence of the pigment composition and the so-called package effect (Yentsch and Phinney, 1989; Bricaud et al, 1995, 2004; Allali et al, 1997; Lohrenz et al, 2003; Stæhr et al, 2004). This effect depends both on algal cell size and intracellular pigment concentration, which in turn vary with the environmental factors: light availability, temperature and nutrient supply. Typically, eutrophic waters are dominated by large cells that harvest light with higher efficiency than small cells, which tend to be predominant in oligotrophic waters (Duysens, 1956). Differences in the shape of phytoplankton absorption spectra, however, refer to the changes in intracellular pigment composition (Stuart et al, 1998; Ciotti et al, 2002; Babin et al., 2003; Bricaud et al, 2004).

The spatial and temporal heterogeneity in the absorption and scattering properties of phytoplankton (Ahn et al, 1992; Kutser et al, 2006; Metsamaa et al, 2006) predicts that significant errors have to be expected if spectral bio-optical models are not optimized for a particular region or season. One possible approach to resolve this problem is to use parameterization of a*ph(λ) variability. Bricaud et al. (1995) recommended to represent a*ph(λ) as a power function of total chlorophyll concentration (TChl – chlorophyll-a concentration including its metabolite phaeophytin-a):

(eq. 1)
where A(λ) and B(λ) are wavelength-specific coefficients estimated from the measurements of optical properties of different algal species. The coefficient A reflects a*ph per TChl unit, while exponent B reflects deformations of a*ph spectrum with the increase of TChl. The dataset of Bricaud et al. (1995) included 815 spectra from oceanic waters, where total chlorophyll concentration ranged between 0.02 and 25 mg m–3.

Strömbeck (2001) re-investigated this model for three relatively clear Swedish lakes and brackish archipelago waters near Stockholm. His parameterization covered almost the same range of total chlorophyll concentrations (0.8-33.1 mg m–3) and the results were only a little different: the new A and B had at some wavelengths higher and at some wavelengths slightly lower values than those published by Bricaud et al. (1995). Stæhr and Markager (2004) provided a linear model of ln-transformed data for predicting a*ph(λ) from total chlorophyll concentration. Their main goal was to elaborate the appropriate formula for a wider TChl range (0.03-88.1 mg m–3) in estuarine, coastal and oceanic waters. However, only two of their study sites among twenty had total chlorophyll concentrations above 22.2 mg m–3. Lately, a similar approach has been used also for 15 lakes in southern Finland (Ylöstalo et al, 2014), where TChl were in same range (Tab. 1). Ficek et al. (2012) and Yoshimura et al. (2012) proposed a a*ph(λ) parameterizations for productive lake waters, where TChl values reached 336 mg m–3. However, their new a* spectra did not correspond to each other. The model of Yoshimura et al. (2012) represented intensive pigment packaging in the region of 460-500 nm, while in the model of Ficek et al. (2012) the package effect was surprisingly weak, especially at maximum a*ph(λ) in blue and red wavelength regions.

Our attempts to apply the above mentioned models for describing of a*ph(λ) in some cyanobacteria-dominated lakes in Estonia were unsuccessful. Cyanobacteria are very common in lakes but rare in sea waters where the above mention models were parametrised. The accessory pigments of cyanobacteria, such as phycocyanin, has absorption properties that are different from those considered in the models parametrized for sea water (Kutser et al, 2006; Metsamaa et al, 2006). Also the physical and chemical conditions of inland waters are different from those in ocean, estuarine and coastal waters and that can influence the performance of the marine models in lakes.

Most of the parameterization algorithms for a*ph(λ) are directed to the determination of A(λ) and B(λ) in the formulae similar to eq.1. As the existing models for a*ph(λ) do not perform sufficiently well in eutrophic lake environment, the main aim of present study was to determine new A(λ) and B(λ) values for eq. 1 that could be used for productive turbid lakes. To achieve this goal, we used the data from three turbid productive lakes in Estonia to examine TChl-specific phytoplankton absorption and parameterized a simple model for describing it spectrally.


Description of lakes

We studied three turbid productive Estonian lakes Peipsi, Võrtsjärv and Harku during ice-free periods (May-October) in 2005-2009 and 2011-2013. In situ and laboratory data were collected from 155 measurement points. Main morphometric characteristics, Secchi depth and optically active constituents of the studied lakes are shown in Tab. 2.

The submeridionally elongated Lake Peipsi (maximum length approximately 150 km and width 42 km) on the border of Estonia and Russia is shallow, turbid, biologically productive and surrounded by many wetland areas along its coast. The lake consists of three limnologically different parts: 1) the northernmost, largest and deepest (2611 km2, mean depth 8.3 m) Lake Peipsi sensu stricto is moderately eutrophic; 2) the southern part, Lake Pihkva (708 km2) is shallower (3.8 m) and hypertrophic; 3) very narrow straitlike Lake Lämmijärv (236 km2, 2.3 m), connecting the former basins, has some dyseutrophic features (Nõges, 2001). While the access to Lake Pihkva (belongs almost entirely to Russia) is restricted by border regulations, no optical data were available for this part of the lake.

The phytoplankton community in Lake Peipsi is typical for large lowland lakes having some similarities to lakes Ladoga, Onega, Vänern and Vättern (Laugaste et al., 2008). Spring phytoplankton communities of Lake Peipsi are dominated by fast-growing species (diatoms, chrysophytes and cryptophytes), which are adapted to the steep gradients in temperature and light conditions. In Lake Peipsi s.s., the main species are Aulacoseira islandica (O. Müller) Simonsen and Stephanodiscus neoastraea Håk et Hickel whereas in Lämmijärv Cyclotella spp. and Aulacoseira ambigua (Grun. in Van Heurck) Simonsen are abundant (Alikas et al., 2010; Laugaste et al., 2010). In summer, the succession of cyanobacteria starts with Anabaena, then Gloeotrichia echinulata (J. S. Smith) P. Richter appears, followed by species of Microcystis. Aphanizomenon flos-aquae (L.) Ralfs prevails in the cyanobacterial community in August-September and in warm autumns even until November (Laugaste et al., 2008, 2013). As cyanobacteria typically contain accessory pigments (Stomp et al., 2007), the absorption properties measured in the present study characterize not only chlorophyll but also other pigments. Also note that TChl in our study means a sum of concentrations of chlorophyll-a and its metabolite phaeophytin-a.

Lake Võrtsjärv is a large and shallow non-stratified eutrophic lake in Central Estonia, well mixed by surface waves and currents. The lake has six main inflows, the outflowing River Emajõgi carries the waters to Lake Peipsi. Due to the restricted outflow, large seasonal and annual fluctuations of the water level are one of the most characteristic features of Lake Võrtsjärv. The absolute water level range of 3.1 m corresponds to a 2.4-fold difference in the mean depth affecting strongly the underwater light climate (Nõges and Nõges, 2012). Phytoplankton biomass is substantially higher in low-water years due to better water column illumination and increased release of phosphorus from resuspended bottom sediments (Nõges et al., 2003). Phytoplankton community in Lake Võrtsjärv is dominated by diatoms and cyanobacteria, accounting for more than two-third of the biomass during the ice-free period from May to October. The most common diatoms are from the genera of Aulacoseira and Cyclotella, cyanophytes are composed of Limnothrix planktonica (Woloszyńska) Meffert and Limnothrix redekei (Van Goor) Meffert, which are accompanied by Planktolyngbya limnetica (Lemmermann) Komárková-Legnerova et Cronberg. Cryptophytes and chrysophytes may become exceptionally abundant during a short period in spring (Nõges et al., 2010).

Lake Harku is located 3 km from the sea on the western border of the Estonian capital Tallinn (59º 25’ N, 24º 37’ E). Situated among the agricultural- and grasslands, the lake has received considerable nutrient enrichment and sewage runoff over the last 50 years of the 20th century (Lepane et al., 2004). During the growing season Lake Harku is characterized by heavy algal blooms, with extraordinarily high values of chlorophyll and total suspended matter concentrations: 398 mg m–3 and 82 g m–3, respectively (Paavel, 2008). Spring phytoplankton in Harku composed of small-celled green algae from the genera Pediastrum (P. duplex Meyen, P. boryanum Meneghini) and Scenedesmus (S. opoliensis P. Richter, S. acuminatus Chodat, S. spinosus Chodat), while in summer mainly coccal forms of cyanobacteria Microcystis (M. wesenbergii Komárek, M. viridis Lemmermann) are abundant (Erm et al., 2002).

Samples collection and laboratory analyses

Water samples were collected from the surface layer (0.2 m) with a standard Ruttner water sampler (Hydrobios GmbH, Kiel, Germany) and stored in the dark and cold for less than 10 h before filtering. Depending on particle concentration in the water 0.1-1 litre was filtered through GF/F-filters (Whatman). Phytoplankton pigments were extracted from the filters with 96% ethanol at 20°C for 24 hours and measured spectrometrically (Hitachi Ltd., Tokyo, Japan; Spectrophotometer model U-3 010) both before and after acidification with dilute hydrochloride acid (ISO, 1992). Later, optical density values were converted respectively to chlorophyll-a and phaeophytin-a concentrations according to Lorenzen (1967) formulas. The sum of chlorophyll-a and phaeophytin-a concentrations is later called as total chlorophyll concentration and abbreviated as TChl.

The absorption coefficients of total particulate and non-algal material retained on GF/F filters were determined respectively before and after pigment bleaching with sodium hypochloride (Ferrari and Tassan, 1999) following the transmittance-reflectance technique (Tassan and Ferrari, 1995, 2002). Filters were scanned with a 2 nm step in wavelength region 400-700 nm using a dual beam UV-Visible spectrophotometer (Hitachi U-3010) equipped with an integrating sphere (60INTEGRATING SPHERE ACCY model 130-0632). Compared with the standard transmittance method, the integrating sphere attachment to a dual beam spectrometer offers a remarkable advantage, allowing the accurate correction for light backscattering by the particles. It should be considered, however, that the GF/F filter itself also strongly scatters light and therefore the absorption of a particle-filter aggregate is greater than in situ absorption of suspended particles. This phenomenon is called pathlength amplification and its correction is based on the empirical relationship of the optical density of particles in suspension and the optical density of the same amount of particles retained on GF/F filters (Tassan and Ferrari, 1995):

(eq. 2)

The spectral absorption of total particulate material [ap(λ)] and of non-algal particles [a NAP(λ)] were calculated respectively from the optical densities of unbleached and bleached and the difference between them was assumed to reflect the absorption of phytoplankton pigments [aph(λ)]:

(eq. 3)
(eq. 4)

The coefficient 2.303 is a factor for converting the natural logarithm to base-10 logarithm, Vfilter is the volume of the filtered water (m3) and Ac is the clearance area of the filter (m2). The clearance area is defined as the area on the filter which is actively used during the filtration. As pigment bleaching with sodium hypochloride may affect the absorption of un-pigmented organic matter in the sample (Ferrari and Tassan, 1999), the determined aph(λ) can include also some phaeopigments associated with particles other than living phytoplankton. Chlorophyll-specific phytoplankton absorption coefficient a*ph(λ) was obtained by dividing aph(λ) by the TChl concentration.

Aliquots for phytoplankton counts (250 ml, Lugol preserved) were analysed with inverted microscope (Ceti Versus, Belgium) under 100x and 400x magnification by using the Utermöhl (1958) technique. The biovolumes of each taxon were estimated by assuming the shape of the species to the closest geometric form (Wetzel and Likens, 1991), after which the biomass (wet weight) was calculated

For determining the regression formulas and other statistical characteristics the Microsoft’s Excel statistical analysis tool ‘Data analysis’ was used.


Variation of phytoplankton biomass and species composition

Seasonal dynamics of phytoplankton composition and biomass (BM) were estimated annually only for the years 2011-2013. Spring phytoplankton BM of Lake Peipsi and Lake Võrtsjärv was generally dominated by diatoms (Tab. 3). The exception was Lake Peipsi in 2011, when crypto- and chrysophytes were most abundant in biomass. This could be explained by the fact that in 2011 only the northern moderately eutrophic basin of Lake Peipsi was visited, while in 2012-2013 samples were taken also in southern more eutrophic regions. In Lake Harku cyanobacteria dominated in vernal phytoplankton biomass while diatoms were also rather abundant (40% of BM) in May of all the years.

During summer the share of cyanobacteria in the phytoplankton biomass of all lakes increased reaching average values of 60%, 65% and 71% in June, July and August, respectively, and remained high until in autumn (53-89% in September and early October). The proportion of diatoms in summer and autumn ranged 2-60% and 2-34%, respectively. Chlorophytes formed less than 22% of phytoplankton biomass during the whole growing season.

The abundance of phytoplankton species in studied lakes changed from chryso- and cryptophytes dominance in May towards cyanobacteria prevalence during summer and autumn (Fig. 1). The most important species of cyanobacteria were Planktolyngbya limnetica in 2011 and Limnothrix redekei and L. planktonica in the subsequent years (2012-2013). Chlorophytes developed from late spring to early autumn and their abundance in lakes varied from 75 cells mL–1 (May) to 61050 cells mL–1 (September).

In Lake Harku Scenedesmus spp. was exceptionally abundant. Diatoms abundance peaked in July 2013, when the density of Asterionella formosa in Lake Peipsi rose up to 2454 cells mL–1. However, generally diatoms constituted less than 13% of total plankton abundance in all studied lakes. Euglenophytes, dinophytes and xantophytes had very little contribution and no evident seasonal variation.

Variability of chlorophyll-specific phytoplankton absorption

Differences in phytoplankton absorption are related to species composition, pigment content and age of cells, availability of nutrients and light. The spectrum of a*ph has two maxima, in blue and red region. Our study showed that the variability of a*ph was greatest in the blue band with values ranging from 0.012 to 0.053 m2 mg–1 at 440 nm. In the red region (676 nm) a*ph ranged between 0.007 and 0.037 m2 mg–1 (Fig. 2).

The spectra had also the shoulders at 420, 490 and 630 nm, associated with accessory pigments (respectively phaeophytins, carotenoids and phycocyanin). The blue to red ratio of a*ph(λ) can be used as an indicator of phytoplankton size, with higher values (e.g., a*ph(440)/a*ph(676) >2.5) known to be associated with the dominance of small-sized populations (Stramski and Morel, 1990). This ratio in turbid productive Estonian lakes varied from 2.9 to 1.1, demonstrating approximately a 3-fold decrease when TChl increased from 2.7 to 315.4 mg m–3.

Several authors (Yentsch and Phinney, 1989; Bricaud et al, 1995, 2004; Ciotti et al, 2002; Babin et al, 2003; Stæhr et al, 2004) found that a*ph(λ) decreases with increasing total chlorophyll concentration and that was also demonstrated in three turbid Estonian lakes (Fig. 3). The greater dispersion of a*ph(440) compared to a*ph(675) is explained by the fact that in blue region the package effect as well cellular pigment content and composition have combined influence on a* while in the red band only the package effect is influential (Bricaud et al., 1995, 2004; Lohrenz et al, 2003; Stæhr et al, 2004).

Parameterization of chlorophyll-specific phytoplankton absorption

To parameterize phytoplankton absorption in the bio-optical models, coefficients A(λ) and B(λ) in eq. 1 were calculated from measured a*ph(λ) spectra. The values of these parameters were tabulated with a 2 nm step over the range 400-700 nm (Tab. 4). Several studies (Bricaud et al, 1995; Strömbeck, 2001; Stæhr and Markager, 2004; Ficek et al, 2012; Yoshimura et al, 2012; Ylöstalo et al, 2014) have parametrized chlorophyll-specific phytoplankton absorption as power function of TChl. Spectra of the corresponding A and B coefficients (together with our results) are shown in Fig. 4.

In ocean, estuarine and coastal waters coefficient A(λ) showed a maximum near 440 nm (Bricaud et al, 1995; Stæhr and Markager, 2004), whereas in turbid productive Estonian lakes it was shifted towards shorter wavelengths (Fig. 4). Such phenomenon indicates a presence of phaeopigments with a peak around 420 nm. In our lakes the contribution by phaeophytin-a varied between 0.5 and 94% (with an average 16.7%) of total chlorophyll concentration. Additionally, we demonstrated a spectral shoulder around 615-645 nm, which is a typical feature of cyanobacteria - characteristic to their phycocyanin pigment (Jeffrey and Vesk, 1997; Simis et al, 2005). In our study the coefficient B(λ) had the highest values in the 600-660 nm region and the lowest in the green part of the spectrum, where a* was not correlated with total chlorophyll concentration (Fig. 4). At minimum a* values of B became unstable and low and even negative in the 476-534 nm region. In Lake Mälaren in Sweden a similar tendency was observed between 580 nm and 635 nm (Strömbeck and Pierson, 2001).

To describe A(λ) and B(λ) coefficients for rather different spring and summer phytoplankton assemblages (Fig. 1 and Tab. 3) we analysed separately two datasets: 20 cases in May for spring and 70 cases in July for summer. In May the values of A at 400-440 nm were lower than those in July, indicating higher package effect and can be explained by the dominance of large cells in vernal phytoplankton. In summer small-celled cyanobacteria dominated, which harvest light with much lower efficiency in the red part of the spectrum the (absorption peak around 630 nm). The parameter B(λ) also showed a large discrepancy between May and July reflecting different pigment composition in vernal and summertime phytoplankton assemblages. The spectra of a*ph(λ) in May July and during the whole summer, measured in situ and calculated using of A(λ) and B(λ) values from Tab. 4, show rather good correspondence in many cases while also discrepancies in the blue and red regions were observed (Fig. 5). Underestimation of a*ph in the blue region was generally accompanied by an overestimation of a*ph in the red region and vice versa. The mismatch between measured and modelled a*ph(λ) values appeared mainly for low and extremely total high chlorophyll concentration, e.g., a large discrepancy from measured and modelled a*ph spectra occurred in May, when TChl in Lake Peipsi was below 8 mg m–3 (Fig. 5a).

Since our database included only 13% of cases with TChl <10 mgm–3, the seasonal models for such low TChl values cannot be fully reliable. In Lake Harku where vernal TChl reached up 113 mg m–3, the parameterization for May gave rather good results (Fig. 5e) while the applicability of July model for summer months depended on the prevalence of cyanobacteria. A further study could help to decide whether the best option is to elaborate two separate parameterization for the blue and red regions of spectra or to use a model which takes into account also the variability of phytoplankton species composition. Total chlorophyll values above 150 mg m–3 were observed only in Lake Harku and in this TChl region both our seasonal models failed (Fig. 5f). As we did not find remarkable decrease of a*ph(λ) with increase at TChl > 80 mg m–3 (Fig. 3), this explains the mismatch between measured and modelled a*ph(λ) spectra for TChl values above 100 mgm–3 in Lake Harku.

Analysing the correspondence of measured and modelled a*ph values in blue (442 nm) and red (676 nm) wavelengths. We found that at 442 nm the determination coefficients (R2) were remarkably lower than those at 676nm, except in May, when R2(442) was 0.548 and R2(676) was 0.325 (Fig. 6 and Tab. 5). The highest R2 value (0.649) appeared in July at 676 nm. Generally R2 values for May and July separately exceeded those calculated for the whole database, expressing the impact of phytoplankton composition in different seasons. Phytoplankton in the analysed turbid lakes changed from chrysoand cryptophytes dominance in May to a predominance of small-celled cyanobacteria during whole summer. In July the determination coefficient of our a*ph model was much higher (R2=0.65) in the red wavelength (676 nm) than in blue region (at 442 nm R2=0.25) where a*ph values are affected by both pigment composition and packaging, but their relative importance is difficult to resolve. In our whole dataset the correspondence of a*ph(meas) vs a*ph (modelled) at 676 nm was a bit weaker (R2=0.49) because of the larger variety of algal groups cell sizes. Chlorophyll-a content of cells varies between different phytoplankton groups and cyanobacteria, which prevailed in our study lakes in July and August, have more accessory pigments and less Chl-a per unit biovolume than other algae, e.g., chlorophytes (Reynolds, 2006).


Chlorophyll-specific phytoplankton absorption in ocean, coastal and lake waters

In different water bodies chlorophyll-specific phytoplankton absorption coefficient values vary in large scale. In blue spectral region Bricaud et al. (1995) derived a range of a*ph(440) between 0.01 and 0.18 m2 mg–1 for ocean waters, whilst Stæhr and Markager (2004) extended this range to 0.015-0.194 m2 mg–1 for estuarine and coastal waters. In lakes in southern Finland a*ph(440) varied from 0.012 to 0.038 m2 mg–1 (Ylöstalo et al., 2014) and in lakes Erken and Kasumigaura from 0.009 to 0.058 m2 mg–1 (Strömbeck, 2001; Yoshimura et al., 2012). In the red spectral region the reported values in ocean, coastal waters and lakes have been quite similar (0.004-0.04 m2 mg–1) compared to those in blue region (Dekker, 1993; Le et al., 2009; Yoshimura et al., 2012; Perkins et al., 2014; references in Ylöstalo et al., 2014). In three turbid productive Estonian lakes a*ph values 0.012-0.053 m2 mg–1 at 440 nm and 0.007-0.037 m2 mg–1 at 676 nm were in same scale with the earlier studies.

The blue to red absorption ratios in the studied Estonian lakes (mean 1.81) were lower than in Lake Taihu (range 1.08-13.9; Le et al., 2009), but comparable to those in the Baltic Sea (1.67-2.54; Seppälä et al., 2005) and other inland waters, like boreal lakes in Southern-Finland (1.10-2.38; Ylöstalo et al., 2014) and three clear-water lakes in Sweden (0.73-3.70; Strömbeck, 2001).

Comparison of parameterizations for ocean, coastal and lake waters

Several studies (Bricaud et al., 1995; Strömbeck, 2001; Stæhr and Markager, 2004; Ficek et al., 2012; Yoshimura et al., 2012; Ylöstalo et al., 2014) have parameterized chlorophyll-specific phytoplankton absorption as power function of TChl (Fig. 4).

In general, our parameter A spectrum had similar features with others -presence of two distinctive peaks at the blue and the red wavelengths in visible range, associated with the absorption of chlorophyll-a. However, few remarkable differences were also noticed. In our study the most pronounced inconsistency occurred around 630 nm, where various cyanobacterial pigments, like phycocyanin, are known to absorb (Simis et al, 2005) and the position of the blue peak of A appeared at 420 nm (Fig. 4) instead it common occurrence at 440 nm. This shift could be attributed to larger contribution of phaeophytin-a, that is characteristic to eutrophic waters, as its absorption peak is located at a shorter wavelength than that of chlorophyll-a (Bricaud et al, 1995). Such shifts of the peak location have been observed also in cryphytophyte-dominated lakes of southern Finland where peak of coefficient A(λ) at 570 nm was attributed to large contribution of crypto-phycoerythrin pigment (Ylöstalo et al, 2014). In Lake Kasumiguara (Yoshimura et al, 2012) coefficient A had a shoulder between 485 nm and 505 nm (Fig. 4b) caused by various carotenoid pigments. The parameter B(λ) shows also great differences between sea waters and lakes. The spectral behaviour of B for ocean, coastal and archipelago waters was rather similar (Fig. 4), but the magnitude was somewhat different, resulting from a weaker package effect in brackish archipelago waters (Strömbeck, 2001). The small shoulder around 660 nm of the B spectra (Bricaud et al, 1995; Stæhr and Markager, 2004) could appear in the presence of Prochlorococcus, species, which have been observed mainly in oligotrophic waters (Partensky et al., 1993).

Influence of the package effect on the parameterization of a*ph(λ)

According to IOCCG (2000), phytoplankton populations found in oligotrophic waters have higher a*ph(λ) values than those in eutrophic waters. The package effect increases when either the cell size or the pigment concentration of the cellular material increases, as a result of depressing phytoplankton absorption at all wavelengths and flattening the a*ph spectrum (Yentsch and Phinney, 1989; Cleveland, 1995; Bricaud et al, 1995, 2004). Our parameterization predicted approximately 2-time variation of a*ph(440) when total chlorophyll varied in the range of 5-240 mg m–3 (Fig. 7b). In the range of 580-700 nm the values of a* at TChl=5 mg m–3 were much bigger than those at higher TChl (30-240 mg m–3). It should be considered, however, that our database comprised only samples of total chlorophyll values less than 5 mg m–3 and that could at least partly explain the discrepancy of a*ph(λ) at TCh l=5 mg m–3 from those at greater TChl values. For any water type separately the increase of TChl accompanied by the decrease of a*ph(λ), except in the some parts of spectrum, where the change of absorption due to total chlorophyll concentration was very small (Fig. 7 c-j). One should consider that for modelling a*ph(λ) both the variation range of total chlorophyll concentrations and the contribution of different TChl values are important. For example, in northern Polish lakes (Ficek et al, 2012) the variation range of TChl was comparable to those in three productive Estonian lakes, whilst the average values of chlorophyll concentrations were rather different, respectively 26.9 and 42.5 mg m–3 and that probably caused also the different results of modelling.

Applicability of the parameterization of phytoplankton absorption spectra for different aquatic environments

Comparison of different modelling results indicated their dependence on the physical and chemical conditions in the aquatic environments as well as on the phytoplankton pigment composition, which in lakes are divergent from those in ocean and coastal waters. For instance, we cannot use the results of Bricaud et al. (1995) on eutrophic lakes as their A(λ) and B(λ) parameterization was limited to the TChl values up to 25 mg m 3. Outside this upper boundary an abnormal increase of a*ph(λ) in the spectral region of 500-600 nm was observed (Fig. 8 c,e,g,i). Similarly, the model of the Stæhr and Markager (2004) did not perform well in the conditions of total chlorophyll values above 100 mg m–3. For this parameterization the artificial shoulder was shifted towards shorter wavelengths (Fig. 8 e,g,i). In three relatively clear Swedish lakes together with brackish archipelago waters in Stockholm (Strömbeck, 2001) the spectral behaviour of a*ph(λ) was rather similar to those in ocean and coastal waters (Fig. 8). Consequently, all the three parameterizations mentioned above (Bricaud et al, 1995; Strömbeck, 2001; Stæhr and Markager, 2004) predict much lower chlorophyll-specific phytoplankton absorption than those observed in turbid productive lakes.

The largest discrepancy in parameterizations of lake models was observed for TChl values below 5 mg m–3 (Fig. 8a), which could be explained by the fact that in these parameterizations the contribution of such a low total chlorophyll concentrations were almost negligible. Additionally, we have to take into account that our databased comprised only four samples of TChl values less than 5 mg m–3. A good coincidence - especially in the red part of the spectrum – was noticed (almost for all models) in cases, when TChl was around 30 mg m–3 (Fig. 8). For higher total chlorophyll values our parameterization had similar features to several studies (Fig. 8f), but in different spectral regions: in the blue absorption band with the results by Yoshimura et al. (2012) and in the red part of spectrum with results by Ylöstalo et al. (2014). The compatibility with Polish lakes (Ficek et al, 2012) was noticed mainly between 490-550 nm. It seems that the improvement of the parameterization of a*ph(λ) spectra for productive and hypertrophic lakes needs a larger dataset, which includes simultaneous measurements of total chlorophyll concentrations, phytoplankton absorption coefficients and - as revealed in the current study - phytoplankton species composition of these inland waters.

In the present study we investigated the chlorophyll-specific phytoplankton absorption coefficients and how to predict these spectra in the case of turbid productive lakes. However, bio-optical models that are used to simulate water reflectance spectra require also the spectra of backscattering coefficient (Gordon et al, 1988). Phytoplankton backscattering coefficient spectra are usually smooth with decrease towards longer wavelengths (Ahn et al, 1992; Kutser, 2004; Vaillancourt et al, 2004; Metsamaa et al, 2006). The exception could be cyanobacteria, which have gas vesicles in their cells that may backscatter light selectively. Note, the published backscattering coefficient spectra for cyanobacteria (Ahn et al, 1992; Kutser, 2004; Metsamaa et al, 2006) do not have high enough spectral resolution in order to determine that with great certainty. Absorption coefficient of CDOM decreases exponentially with increasing wavelength and absorption and backscattering properties of water molecules and mineral particles are spectrally smooth (Kutser et al, 2001). Consequently, in eutrophic lakes the specific absorption coefficient, studied by us, is the most important factor determining the shape of water reflectance spectra. The approach proposed by Bricaud et al (1995) has been used in semi-analytical reflectance models for nearly two decades (Kutser, 1997; Kutser et al, 2001). However, the results of our study should help to improve the performance of the semi-empirical and radiative transfer models also requiring a*ph(λ) as an input parameter.


In the present paper we examined and parameterized a model that allows calculating the chlorophyll-specific phytoplankton absorption coefficient spectra for turbid lakes. This kind of models should be developed and validated for improving remote sensing algorithms, estimation of primary production and retrieval of phytoplankton community structure from optical data. The coefficients A(λ) and B(λ) of our model differ from those found in sea, coastal waters and other types of lakes. For any water type separately the increase of total chlorophyll concentration accompanied with the decrease of a*ph. Our results showed significant seasonal differences between the model parameters due to diversity of the phytoplankton assemblages. This suggests that season-specific models should be developed and validated. Improving the modelling of chlorophyll-specific phytoplankton absorption spectra for productive and hypertrophic lakes is still pending on the availability of a larger dataset, which includes simultaneous measurements of chlorophyll concentrations, phytoplankton absorption coefficients and phytoplankton species composition of inland waters. Our results implied that total chlorophyll concentration is not a universal predictor of the magnitude of chlorophyll-specific phytoplankton absorption coefficient. The a*ph(λ) models are also likely site and season dependent. Further research is needed for quantifying the role of accessory pigments and other optical constituents as well as the cell size of dominant algal species for considering their influence on the modelling outputs.


This research was supported by Estonian Science Foundation (grants 7156, 8576, 8654 and 9102), and by Estonian Ministry of Education and Research (institutional research funding project IUT21-2). The authors are grateful to Dr. Tuuli Kauer and Evi Lill for their help with laboratory analyses.



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Fig. 1.

Dynamics of phytoplankton communities in productive Estonian lakes described by percentages of abundance of major taxonomic assemblages (altogether 81 analyses in 2011-2013). Bac, Bacillariophyta; Chloro, Chlorophyta; Chryso, Chrysophyta; Crypto, Cryptophyta; Cyano, Cyanobacteria.

Fig. 2.

Variability of chlorophyll-specific phytoplankton absorption coefficient [a*ph(λ)] measured in three productive Estonian lakes: minimum and maximum spectra (dotted), mean with standard deviations (solid).

Fig. 3.

Dependence of chlorophyll-specific phytoplankton absorption coefficient a*ph(λ) on total chlorophyll concentrations (TChl, chlorophyll-a + phaeopigment-a) in turbid productive Estonian lakes: (a) at 440 nm and (b) at 676 nm.

Fig. 4.

Parameters A and B for modelling chlorophyll-specific phytoplankton absorption coefficient in different water bodies: (left column) for ocean, coastal and archipelago waters together with three clear Swedish lakes and (right column) for productive lakes.

Fig. 5.

Chlorophyll-specific phytoplankton absorption coefficient (a*ph(λ)) in three turbid productive Estonian lakes measured in situ and calculated on the basis of total chlorophyll (TChl) concentrations and A(λ) and B(λ) values from Tab. 4.

Fig. 6.

Modelled vs measured chlorophyll-specific phytoplankton absorption coefficient (a*ph(λ)) for turbid productive Estonian lakes. Months in the legend are corresponding to the seasonal models used for parameterization of a*ph(λ). The corresponding statistical characteristics are shown in Tab. 5.

Fig. 7.

Spectral distribution of a ph(λ) for TChl concentrations between 5 mg m–3 and 240 mg m–3 Left column: for ocean, brackish archipelago and clear inland waters; right column: for productive lakes.

Fig. 8.

Chlorophyll-specific phytoplankton absorption spectra for various values of total chlorophyll concentration (from 5 to 240 mg m–3), calculated using eq. 1 with the spectral values of parameters A(λ) and B(λ) recommended by cited authors and modelled in present study.

Tab. 1.

The models of chlorophyll-specific phytoplankton absorption coefficient for lakes and selected ocean and coastal waters with the ranges of total chlorophyll concentration (TChl).

Author% Study site TChl (mg m–3)
Bricaud et al, 1995% Oceanic waters 0.02-25.0
Strömbeck, 2001% Archipelago waters near Stockholm and 3 relatively clear Swedish lakes 0.83-33.1
Stæhr and Markager, 2004% Estuarine, costal and oceanic waters 0.03-88.1
Ficek et al, 2012% 15 Pomeranian lakes, Poland 1.20-336.0
Yoshimura et al, 2012% Lake Kasumiguara, Japan 36.6-214.4
Ylöstalo et al, 2014% 15 boreal lakes, southern Finland 1.80-94.7
Tab. 2.

Morphometric data and bio-optical parameters of studied turbid Estonian lakes.

Parameter Peipsi Võrtsjärv Harku
Area (km2) 3555 270 1.64
Mean depth (m) 7.0 2.8 1.6
Maximum depth (m) 15 6.0 2.5
TChl (mg m–3) 19.8±13.0 51.2±14.2 160.3±85.1
Chl-a (mg m–3) 16.5±11.6 44.3±12.8 132.6±64.8
Phaeophytin-a (mg m–3) 3.5±2.8 5.9±4.6 26.4±42.6
TSM (g m–3) 7.4±4.8 17.2±5.8 36.2±15.7
aph(440) (m–1) 0.5±0.3 1.4±0.4 3.5±1.6
aCDOM (380) (m–1) 9.1±3.0 9.3±2.3 13.7±3.5
Secchi depth (m) 1.5±0.6 0.7±0.3 0.4±0.2

[i] Chl-a, concentration of chlorophyll-a; TSM, concentration of total suspended matter; Phaeophytin -a, concentration of phaephytin-a; Secchi depth, relative water transparency; TChl, chlorophyll-a concentration including its metabolite phaeophytin-a; aph(440), absorption coefficient of phytoplankton at wavelength 420 nm; aCDOM(380), absorption coefficient of coloured dissolved organic matter at wavelength 420 nm.

Tab. 3.

Seasonal ranges of phytoplankton biomass (wet weight, g m3) in studied turbid Estonian lakes.

Lake Diatoms Cyanobacteria
May July Sept May July Sept
Peipsi 0.05-1.13 0.9-5.1 0.4-3.4 0.05-0.4 2.9-13.3 3.2-9.5
Võrtsjärv 2.5-11.0 2.8-8.6 3.4-7.7 1.2-3.7 12.5-33.5 6.2-20.7
Harku 1.0-4.6 1.28 2.4-4.9 1.5-8.1 50.6 33.3-89.5
Tab. 4.

Spectral values of the numerical coefficients A(λ) and B(λ) for the parameterization of chlorophyll-specific phytoplankton absorption coefficient as a function of TChl in studied turbid Estonian lakes. The values of R2 calculated are from power regression. N=155 is the number of water samples use for parameterization.

λ (nm) A B R2 λ (nm) A B R2
400 0.0483 0.2114 0.2889 488 0.0122 -0.0231 0.0026
402 0.0498 0.2127 0.3023 490 0.0121 -0.0216 0.0022
404 0.0506 0.2105 0.3055 492 0.0119 -0.0201 0.0021
406 0.0516 0.2104 0.3171 494 0.0117 -0.0198 0.0020
408 0.0526 0.2101 0.3244 496 0.0114 -0.0175 0.0020
410 0.0531 0.2079 0.3232 498 0.0113 -0.0151 0.0012
412 0.0534 0.2054 0.3210 500 0.0112 -0.0137 0.0005
414 0.0537 0.2025 0.3188 502 0.0109 -0.0123 0.0005
416 0.0534 0.1988 0.3150 504 0.0103 -0.0108 0.0009
418 0.0523 0.1950 0.3041 506 0.0098 -0.0121 0.0012
420 0.0516 0.1912 0.2988 508 0.0094 -0.0133 0.0011
422 0.0514 0.1873 0.2949 510 0.0091 -0.0146 0.0010
424 0.0503 0.1819 0.2842 512 0.0086 -0.0176 0.0013
426 0.0486 0.1724 0.2631 514 0.0082 -0.0207 0.0017
428 0.0472 0.1645 0.2488 516 0.0078 -0.0232 0.0020
430 0.0467 0.1602 0.2410 518 0.0075 -0.0247 0.0023
432 0.0462 0.1554 0.2316 520 0.0072 -0.0266 0.0025
434 0.0454 0.1495 0.2170 522 0.0069 -0.0282 0.0026
436 0.0446 0.1435 0.2024 524 0.0066 -0.0262 0.0025
438 0.0431 0.1361 0.1847 526 0.0064 -0.0243 0.0022
440 0.0412 0.1280 0.1655 528 0.0064 -0.0206 0.0013
442 0.0389 0.1193 0.1455 530 0.0062 -0.0160 0.0010
444 0.0363 0.1116 0.1260 532 0.0061 -0.0089 0.0004
446 0.0337 0.1060 0.1102 534 0.0060 -0.0018 0.0003
448 0.0311 0.0999 0.0949 536 0.0058 0.0053 0.0001
450 0.0287 0.0929 0.0785 538 0.0061 0.0165 0.0004
452 0.0264 0.0837 0.0604 540 0.0063 0.0278 0.0022
454 0.0246 0.0762 0.0471 542 0.0063 0.0343 0.0030
456 0.0229 0.0680 0.0354 544 0.0060 0.0329 0.0018
458 0.0217 0.0612 0.0274 546 0.0059 0.0314 0.0022
460 0.0204 0.0553 0.0188 548 0.0062 0.0310 0.0019
462 0.0198 0.0495 0.0168 550 0.0064 0.0626 0.0108
464 0.0193 0.0463 0.0149 552 0.0069 0.0830 0.0208
466 0.0181 0.0378 0.0092 554 0.0072 0.0986 0.0297
468 0.0169 0.0263 0.0043 556 0.0075 0.1077 0.0352
470 0.0162 0.0194 0.0023 558 0.0079 0.1271 0.0560
472 0.0157 0.0159 0.0015 560 0.0083 0.1395 0.0741
474 0.0149 0.0081 0.0004 562 0.0086 0.1482 0.0888
476 0.0141 -0.0015 0.0000 564 0.0090 0.1598 0.1097
478 0.0135 -0.0092 0.0005 566 0.0097 0.1715 0.1201
480 0.0130 -0.0144 0.0011 568 0.0103 0.1833 0.1556
482 0.0127 -0.0189 0.0018 570 0.0109 0.1967 0.1886
484 0.0124 -0.0216 0.0024 572 0.0115 0.2049 0.2126
486 0.0123 -0.0224 0.0031 574 0.0119 0.2108 0.2336
576 0.0124 0.2182 0.2580 640 0.0228 0.3007 0.4522
578 0.0131 0.2282 0.2856 642 0.0227 0.3010 0.4535
580 0.0137 0.2352 0.3097 644 0.0223 0.3009 0.4533
582 0.0142 0.2421 0.3325 646 0.0220 0.2994 0.4501
584 0.0147 0.2491 0.3434 648 0.0215 0.2953 0.4477
586 0.0152 0.2552 0.3605 650 0.0211 0.2909 0.4445
588 0.0157 0.2622 0.3758 652 0.0213 0.2890 0.4488
590 0.0162 0.2677 0.3828 654 0.0218 0.2870 0.4537
592 0.0168 0.2749 0.3923 656 0.0229 0.2868 0.4641
594 0.0172 0.2795 0.3977 658 0.0242 0.2847 0.4708
596 0.0176 0.2835 0.4059 660 0.0259 0.2837 0.4772
598 0.0178 0.2856 0.4089 662 0.0278 0.2812 0.4808
600 0.0181 0.2878 0.4124 664 0.0295 0.2746 0.4778
602 0.0187 0.2899 0.4169 666 0.0311 0.2676 0.4670
604 0.0191 0.2920 0.4187 668 0.0325 0.2606 0.4640
606 0.0197 0.2939 0.4244 670 0.0334 0.2550 0.4578
608 0.0203 0.2943 0.4256 672 0.0339 0.2488 0.4521
610 0.0208 0.2952 0.4291 674 0.0337 0.2426 0.4371
612 0.0214 0.2949 0.4295 676 0.0334 0.2374 0.4307
614 0.0218 0.2941 0.4307 678 0.0329 0.2337 0.4246
616 0.0223 0.2934 0.4334 680 0.0320 0.2313 0.4202
618 0.0228 0.2928 0.4344 682 0.0302 0.2284 0.4125
620 0.0233 0.2939 0.4382 684 0.0280 0.2295 0.4146
622 0.0236 0.2946 0.4400 686 0.0255 0.2356 0.4222
624 0.0240 0.2957 0.4437 688 0.0231 0.2454 0.4313
626 0.0241 0.2960 0.4460 690 0.0208 0.2580 0.4399
628 0.0242 0.2971 0.4494 692 0.0183 0.2703 0.4365
630 0.0244 0.2993 0.4521 694 0.0166 0.2932 0.4341
632 0.0243 0.2998 0.4538 696 0.0157 0.3325 0.4422
634 0.0240 0.2998 0.4536 698 0.0155 0.3770 0.4423
636 0.0235 0.3001 0.4496 700 0.0152 0.4183 0.4280
638 0.0230 0.3004 0.4495
Tab. 5.

Statistical analysis of the correspondence of the measured (x) and modelled (y) a*ph at 442 nm and 676 nm.

Data R2 SE P MRE (%) N Regression
442 nm
All 0.195 0.0026 3·10–8 1.45 155 y=0.022+0.182x
May 0.548 0.0026 0.0003 2.22 20 y=0.015+0.442x
July 0.254 0.0035 310–5 3.76 70 y=0.020+0.247x
676 nm
All 0.495 0.0025 3.23 155 y=0.087+0.459x
May 0.325 0.0013 0.011 2.25 20 y=0.011+0.417x
July 0.649 0.0031 3·10–15 4.63 70 y=0.007+0.621x

[i] MRE, mean relative error.

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