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In the course of a routine water-quality survey in meso-oligotrophic lake Geneva (Switzerland), suspended matter was collected by filtration on 0.2 μm membranes in July and August 2012 at the depth of maximal chlorophyll a (Chl a) concentration (2 mg m–3). Examination by scanning electron microscopy revealed the presence of numerous dark and gelatinous patches occluding the pores of the membranes, containing high numbers of picoplanktonic cells and, in places, clusters of high-reflectance smooth microspheres (1-2 μm in diameter). Their chemical composition, determined by semi-quantitative, energy-dispersive X ray spectroscopy (EDS) showed magnesium (Mg), calcium (Ca), strontium (Sr) and barium (Ba) (alkaline earth metals) to be the dominant cations. Among the anions, phosphorus (P) and carbon (C) were present, but only the latter is considered here (as carbonate). The microspheres were subdivided into four types represented in a Ca-Sr-Ba ternary space. All types are confined within a domain bound by Ca>45, Sr<10 and Ba<50 (in mole %). Type I, the most frequent, displays a broad variability in Ba/Ca, even within a given cluster. Types II and III are devoid of Ba, but may incorporate P. Type IV contains only Ca. The Type I composition resembles that of benstonite, a Group IIA carbonate that was recently found as intracellular granules in a cyanobacterium from alkaline lake Alchichica (Mexico).Lake Geneva microspheres are solid, featureless and embedded in a mucilage-looking substance in the vicinity of, but seemingly not inside, picoplanktonic cells morphologically similar to Chlorella and Synechococcus. In summer 2012, the macroscopic physico-chemical conditions in lake Geneva epilimnion were such as to allow precipitation of Ca but not of Sr and Ba carbonates. Favourable conditions did exist, though, in the micro-environment provided by the combination of active picoplankton and a mucilaginous envelope. Further studies are ongoing to investigate the vertical distribution of the microspheres, their internal structure and their exact mineralogical composition, as well as the taxonomy of the picoplankton and the nature of the mucilage, in order to gain a proper understanding of this intriguing process of alkaline-earth metals sequestration.