PADHYE, KOTOV, DAHANUKAR, and DUMONT: Biogeography of the Water Flea Daphnia O. F. Müller (Crustacea: Branchiopoda: Anomopoda) on the Indian Subcontinent

Biogeography of the Water Flea Daphnia O. F. Müller (Crustacea: Branchiopoda: Anomopoda) on the Indian Subcontinent


Studies on Daphnia distribution in Indian subcontinent have been few and regionally restricted despite Daphnia being by far the most studied cladoceran. We here present a first biogeographical assessment of the genus on the Indian subcontinent (Afghanistan, Pakistan, India, Nepal, Bhutan, Bangladesh and Sri Lanka). We collected all pertinent literature and considered nineteen bioclimatic variables along with latitude, longitude, and altitude for statistical analysis of factors governing distribution in space. Significant variables (determined by Kruskal Wallis test) were tested by nonparametric multivariate analysis of variance (PERMANOVA) to clarify whether Daphnia species had specific environmental requirements. Canonical correspondence analysis was used to understand how environmental variables affected distribution. Eight Daphnia (Ctenodaphnia) and 4 Daphnia s.str. occurred at 100 different localities. The variables temperature, altitude and latitude differed among species and so did their bio-climatic requirements. Daphnia distribution responded positively to altitude and negatively to a decrease in latitude and temperature. We confirm the existence of three complexes of Daphnia in the Indian subcontinent: i) widely distributed species and species complexes; ii) high altitude endemics; and iii) low latitude D. (Ctenodaphnia) species.


The Cladocera (Crustacea: Branchiopoda) constitute an ancient group of primarily freshwater crustaceans whose major differentiation may have occurred before the Permian (Kotov and Taylor, 2011). Until the Late Cenozoic, the Cladocera (and other Branchiopoda) are believed to have been much species-richer than today (Kerfoot and Lynch, 1987; Korovchinsky, 2006). As a result of climatic changes in the Tertiary, maximum cladoceran species richness is now concentrated in the subtropical zone of both hemispheres and at higher elevations within the true tropics (Korovchinsky, 2006).

Daphnia (Anomopoda: Daphniidae) is among the best-studied freshwater organisms (Lampert, 2011). It has an origin estimated at more than 200 Myr (Taylor et al., 1996; Kotov and Taylor 2010, 2011). Currently the genus is classified into three sub-genera (Adamowicz et al., 2009) with 361 formally described species in toto of which c. 24% are considered valid (Kotov, 2015). Among them, only few inhabit the lowland equatorial zone (Fernando, 1980; Fernando and Kanduru,1984; Benzie. 2005), with species occurring only above particular altitudes (Dumont, 1980; Green, 1995).

The biogeographical patterns observed in many Daphnia species in the Neotropics, Neartic, Paleartic and Afro-tropical regions have been assessed relatively adequately (Ishida and Taylor, 2007; Mergeay et al, 2008; Adamowicz et al, 2009) but little information is available on the Indian subcontinent. Yet, this region is interesting for biogeography because of i) a complex geological history; ii) a wide range of altitudes; and iii) a strong seasonality with a distinct rainfall season (Monsoon) (Mani, 1974; Briggs, 2003). This has allowed the formation of various biomes, ranging from tropical to Alpine forests and deserts (Mani, 1974) resulting in a combination of endemic, Oriental, Palaearctic as well as Gondwanan biota (Gower et al, 2002; Whatley and Bajpai, 2006; Koehler and Glaubrecht, 2007; Kulkarni and Pai, 2016). Their presence has been explained by hypotheses like the ‘Indian raft’ and ‘Out of Asia into India’ (Chatterjee and Scotese, 1999; Karanth, 2003), but relevance of such scenarios for passively dispersed zooplankton is uncertain.

Here, our aim was to analyze Daphnia distribution on the Indian sub-continent, discuss associations between species and environmental variables, and evaluate the relative importance of selected climatic variables in elucidating the distributional patterns observed.


Study area

Our study area (Fig. 1) extends from Afghanistan and Pakistan to the west, India in the centre, Nepal and Bhutan to the east and Sri Lanka to the south (between 38°N to 4°N latitudes and 60°E to 98° E longitudes). Geographically, this region includes the Hindukush in the northwest, Himalayas from north till north-east; Indo-Gangetic plains on the Himalayan slopes, a central plateau region (like Deccan plateau) flanked by the more continuous Western and more fragmented Eastern Ghats, and a peninsular region bordered by a narrow coastline (Mani, 1974).

An altitudinal gradient is seen as we move down along the latitude. The altitude of the Himalayas ranges from 6600 m asl in northern and northwestern part (Tibetan Himalayas) to 900-1200 m asl in the more southern Sivalik ranges. The Central Indian subcontinent (plateau region) has an altitudinal range of 350-900 m asl, the highest peak in peninsular region of the subcontinent reaches nearly 2600 m asl. The southernmost region of the subcontinent, viz. Sri Lanka, has an altitudinal range of 0-2500 m.

Most of the Indian subcontinent has a monsoon climate, with rains for 3-4 months, usually from June till September/October. Part of the southern region and the north-eastern zone also receive rains from the retreating monsoon in November and December.

Data collection and GIS analysis

Data were gathered through mining of the literature published on Daphnia faunistics, taxonomy and biology. We used a conservative approach in selecting literature on Daphnia occurrence because a large number of Daphnia records from the sub-continent are dubious (Chatterjee et al., 2013). We only accepted records having at least some brief description of the animals with illustrations making possible a check of the identification of the cited species (for all records, see Supplementary Tab. 1). No reliable records of Daphnia could be obtained from Bangladesh and only a single report of D. tibetana was available from Bhutan (H. Dumont, pers. obs.).

Latitude and longitude data on each locality were obtained from Google Earth portal. A set of 19 bioclimatic variables and altitudes were extracted from the BIOCLIM dataset (; Hijmans et al., 2005) at ten-minute spatial resolution (for names see Tab. 1). Broad scale resolution was used as many of the localities given were quite nonspecific (Ex. Kolkata as a locality).

Data analysis

Environmental variables including latitude, longitude, altitude and the 19 bioclimatic variables were considered for statistical analysis. Univariate normality of each variable was checked using Shapiro-Wilk test. Since all variables proved to be non-normal, variables that were significantly different among Daphnia species were identified using non-parametric Kruskal-Wallis one-way analysis of variance. As multiple tests were performed, the family-wise error rate was corrected using Bonferroni correction.

Significant variables were then used in analyzing Daphnia distribution. The null hypothesis that the data is multivariate normal was checked using an omnibus test (Doornik and Hansen, 2008). Since the data was not multivariate normal, nonparametric multivariate analysis of variance (PERMANOVA) was used to find out whether given Daphnia species had significantly different requirements for environmental variables (Anderson, 2001). Relationship of Daphnia species distribution to the bio-climatic variables was investigated using canonical correspondence analysis (CCA). This analysis was performed using the statistically significant variables identified by a Kruskal Wallis test (Tab. 2) and the Daphnia occurrence data for all the 100 localities. The significance of the analysis was tested using Monte Carlo permutations (n=999). Statistical analysis was performed in PAST (Hammer et al., 2001).


Literature survey yielded a total of 134 records of Daphnia species from 100 different localities (Supplementary Tab. 2). The occurrence data were patchy in Northern and Central India, relatively well studied, while the Eastern, Northeastern region and North Western regions had a poorer coverage.

Diversity and taxonomy

Twelve species of Daphnia have been reported from the region (few comprising of presumable species groups) (Tab. 3), of which eight belong to the subgenus D. (Ctenodaphnia), and four to the subgenus Daphnia s.str. Among them, Daphnia (C.) lumholtzi and D. (C.) carinata s.l. are the most commonly reported species, while D. (D.) dentifera and D. (D.) obtusa s.l. have only two records each. Daphnia (D.) pulex was the most frequently reported Daphnia s.str. species followed by D. (D.) longispina. The highest number of species considering both sub-genera was observed at higher latitudes (>25°N) (9 species) and at low and mid altitudes (8 species) and decreased at high altitudes (>5000 m asl) (5 species) (Fig. 2 b,d) and lowlands.

Distribution patterns

The widely distributed Daphnia species (both Daphnia and Ctenodaphnia) showed similar ranges of annual mean temperature and seasonality (Tab. 3; Supplementary Tab. 2). Daphnia (C.) carinata s.l. was seen in localities having a wide range of temperatures and high seasonality while D. (C.) cephalata s.l. and D. (C.) similis s.l. had much narrower ranges of seasonality. D. (C.) cephalata s.l. and D. (C.) similoides, restricted to south India (Fig. 3b), showed similar temperature seasonality ranges. Daphnia (D.) longispina s.l. was observed at a wider range of average annual temperatures. Ranges of annual mean temperature broadly corresponded with the latitudinal and altitudinal distribution pattern seen in both Daphnia s.str. and D. (Ctenodaphnia) (Tab. 3; Fig. 2 a,c).

The highest species number has therefore been reported from higher latitudes and mid altitudes (median value of altitude for the study area is 2500 m) while the trans-Himalayas, the highest altitudinal and lowest temperature zones of the sub-continent seem to be the most impoverished zones, with only two species, i.e. D. (C.) tibetana and D. (D.) dentifera (Fig. 2 a and b, respectively). It was demonstrated earlier that these taxa prefer high altitudes (Manca et al., 1994, 1998, 2006; Möst et al., 2013; Ma et al., 2015).

Based on temperature, latitudinal and altitudinal distribution patterns of Daphnia, three groups of species were observed:

  1. Widely distributed taxa belonging to species complexes of both Daphnia and Ctenodaphnia subgenera, widely distributed in Eurasia (both in Palaearctic and Oriental zones): D. (D.) pulex s.l., D. (D.) longispina s.l., D. (C.) magna s.l., D. (C.) similis s.l., D. (C.) lumholtzi;

  2. Elements restricted to the high altitudinal Himalayan region: D. (C.) fusca, D. (C.) tibetana and D. (D.) dentifera;

  3. Species restricted to lower latitudes with truly tropical climate (only Ctenodaphnia): D. (C.) cephalata and D. (C.) similoides, as also reported by Benzie (2005).

Environmental effects on distribution

Latitude, altitude and almost all bioclimatic variables pertaining to temperature were significant in determining Daphnia species distribution while none of the precipitation variables were significant, an unexpected conclusion (Tab. 2). The null hypothesis that all Daphnia species and species groups had similar requirements of environmental variables was rejected as per PERMANOVA (permutations=9999, F=8.423, P<0.001) (Supplementary Tab. 3).

The first two CCA axes explained 61.66% of variance (permutations=9999; trace=1.775; P<0.001) (Fig. 4). Altitude correlated positively on the first axis (r=0.72) while almost all the temperature climatic variables correlated negatively with Mean Temperature of Warmest Quarter (r=-0.69) and Annual mean temp (r=-0.67) being the highest. Latitude (r=-0.58) was negatively correlated with the second axis while Isothermality (r=0.54) correlated positively with the second axis.

Distribution of all the species and possible species groups of the sub-genus Daphnia positively correlated with latitude, altitude and negatively correlated with temperature variables. For the subgenus Ctenodaphnia, three groups, based on the groups mentioned earlier, could be singled out, with distribution determined by latitude and altitude. D. (C.) cephalata s.l. and D. (C.) similoides were observed in localities where the variations in the temperatures were less. Conversely, D. (C.) tibetana and D. (C.) fusca were observed in localities having lower mean temperatures and a higher annual temperature variation.


Confused taxonomy prevents final biogeographic conclusions

With the old concept of ‘cosmopolitanism’ in zooplankton being replaced by ‘continental endemism’ or ‘regional endemism’ (Gomez et al., 2000; Fontaneto, 2011; Marrone et al., 2013), biogeographical studies of the components of this community have become more relevant. Cladoceran investigations currently provide many good examples of non-cosmopolitanism in the water fleas (Frey, 1987; Xu et al., 2009).

The Indian sub-continent hosts only about 3.5% of the known Daphnia species (Popova and Kotov, 2013) with only few known regional endemics like Daphnia (C.) fusca Gurney, 1906 and D. (C.) similoides Hudec, 1991. This situation is most likely an artifact due to: i) a large area of the sub-continent remaining unexplored (Fig. 1), ii) nomenclatural inconsistencies in using of names in different geographical regions (Benzie, 2005; Petrusek et al., 2008), namely a formal assignment of the Indian populations to European taxa without detailed morphological analysis (see Kotov and Taylor, 2010; Chatterjee et al., 2013; Kotov, 2015); and iii) lack of DNA sequence data, which are becoming essential to Daphnia taxonomy in the light of the existence of complexes of cryptic or pseudocryptic species (Kotov, 2015).

Incomplete taxonomic and faunistic data of the Cladocera has long held up its zoogeographical study (Frey, 1987; Dumont and Negrea, 2002). True cosmopolitans are rare (Dumont, 1994; Crease et al., 2012) while most species and phylogroups are limited in distribution (Havel and Shurin, 2004; Xu et al., 2009). Detailed morphological and molecular studies across various regions have started resolving ranges in a more fine-grained way (Adamowicz et al., 2009). Highly prevalent Daphnia groups like D. (C.) carinata s.l., D. (D.) longispina s.l. and D. (D.) pulex s.l. are now understood to be species complexes having regionally restricted elements in different regions of the planet (Hebert and Wilson, 1994; Taylor et al., 1996; Crease et al., 2012).

There are undoubtedly more cryptic lineages of Daphnia yet to be discovered in Africa and Asia (Adamowicz et al., 2009). A comparative analysis with other areas of the world at this stage can only be tentative. Based on the currently available data (i.e., Chatterjee et al., 2013), the Indian species richness is lower than that of China, where 20 species are reported to occur (Xiang et al., 2015) but it is higher than that of South-East Asia (3 species of Ctenodaphnia, Hudec, 1991; Korovchinsky, 2013). A thorough re-evaluation of the taxa listed above as ‘s.l.’ could significantly increase the number of Indian species, though, ‘s.l.’ taxa could themselves be also a subject of biogeographic studies (Fontaneto et al., 2011).

Distribution of Daphnia

Distribution of Daphnia species in the region corresponds to their known preferences in terms of latitude and altitude. Indeed, Daphnia (D.) longispina s.l., D. (D.) pulex s.l. and D. (C.) tibetana are restricted to northern regions while species like D. (C.) cephalata s.l. and D. (C.) similoides occur only at lower latitudes (Benzie, 2005) (Fig. 3 a,b). This implies particular environmental requirements of temperature and restriction to specific altitudes and latitudes altitude and latitude (Fig. 4; Supplementary Tab. 3). Contrastingly, widespread species like D. (C.) carinata s.l. and D. (C.) lumholtzi occurring in a wide range of altitude and latitude were shown to be tolerant to a wide range of environmental (temperature) necessities (Fig. 4), as evident from the CCA analysis. Latitude (along with temperature and altitude) clearly separated the Daphnia s.str. species from the D. (Ctenodaphnia) species, and the high altitudinal endemics from the widely distributed species complexes (Fig. 4). The species richness patterning in subgenus Daphnia s.str. observed in the study area further confirmed the bipolar distribution observed in these cladocerans (Dumont, 1980; Popova and Kotov, 2013). Increasing diversity toward the tropics is a pattern shared across a broad range of animal taxa (Hillebrand, 2004; Mittelbach et al., 2007) but there are numerous exceptions in insect groups like Ephemeroptera, Plecoptera and crustaceans like Anostraca (Boyero et al., 2011; Rogers, 2014). Observations by Fernando (1980) that all representatives of the sub-genus Daphnia are restricted to >24° N in the Indian subcontinent can be supplemented by the difference in average temperature between the optimum zones for survival of Daphnia (25-50°N) and the true tropics (Korovchinsky, 2006) (for the study area, median annual temperature for 6-24°N zone=25.3°C and for 25-37°N zone=18.05°C). Irrespective of this difference, widely distributed Daphnia and Ctenodaphnia show overlapping ranges in many temperature and BIOCLIM variables, perhaps explaining why many of the species do not show significantly different temperature requirements (Tab. 3; Supplementary Tab. 2). D. (C.) lumholtzi and D. (C.) carinata s.l. are restricted to regions that are permanently warm or have hot summer (Fryer, 1991) which was not seen to be the case (Tab. 3; Fig. 3 a,c). Mid altitudes (1000-2000 m asl) harbored the maximum number of Daphnia species (n=9), while richness decreased with a further rise in altitude (Fig. 2d). The most common elevational pattern observed in species richness is a bell shaped distribution with highest numbers at the middle elevations (Lomolino, 2001). Very high altitudes (>3500 m asl) only sustained species like D. (D.) dentifera and D. (C.) tibetana (Fig. 3 a,b). Decline in productivity and resource diversity, unpredictable weather conditions and more UV radiation at high altitude are some of the possible reasons for lower species richness at high elevations (Cabrera et al., 1997; Dvorkin and Steinberger, 1999).

Various studies, however, provide evidence that mountainous regions in the lower latitudes harbor a number of endemic cladoceran taxa allied to more northern forms (Kotov et al., 2010) and that Daphnia species are often observed in the high altitudinal zones at lower latitudes of Africa and South America (Green, 1995; Kotov et al., 2010; Kotov and Taylor, 2010). Such ‘Löffler Islands’ (‘high altitude regions containing cold water habitats with extra-tropical freshwater faunas’ (sensu Van Damme and Eggermont, 2011) harboring endemic strains of Palaearctic Daphnia in Africa (Green, 1995; Van Damme and Eggermont, 2011) are not known at lower latitudes of the Indian sub-continent. Even widely distributed species complexes like D. (D.) pulex s.l., D. (D.) obtusa s.l. and D. (D.) longispina s.l. are not found commonly at higher altitudes regions of lower latitudes. This is an indication that other factors co-influence the distribution of planktonic Cladocera, and hence one should not be too rigid in interpretations of altitudinal distributions (Green, 1995).


We confirm the existence of three complexes of Daphnia in the Indian subcontinent: i) widely distributed species and species complexes; ii) high altitude endemics; and iii) low latitude D. (Ctenodaphnia) species. Only few species are found in tropical lowlands, with Daphnia s. str. completely absent. Also, we demonstrated that just temperature variation (as a result of altitudinal and latitudinal gradients) influenced Daphnia distribution, explaining some of the species groups observed.


AAK was supported by Russian Government Program of Competitive Growth of Kazan Federal University. SP acknowledges Sanjay Molur, Wildlife Information Liaison Development society for their support.



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Fig. 1.

Indian subcontinent considered for the study along with distribution of study sites (circles represent each locality).

Fig. 2.

Distribution of taxa from the a) subgenus Daphnia and b) subgenus Ctenodaphnia.

Fig. 3.

a,c) Latitudinal and altitudinal ranges of all species. b,d) Total number of species of both sub genera observed across latitudinal and altitudinal classes.

Fig. 4.

Canonical correspondence analysis for Daphnia species and the environmental variables. Scree plot is provided in the inset.

Tab. 1.

Names of the BIOCLIM variables considered for the study.

BIOCLIM Description
Bio1 Annual mean temperature
Bio2 Mean diurnal range (mean of monthly) (max temp - min temp)
Bio3 Isothermality - (Bio2/Bio7) (*100)
Bio4 Temperature seasonality (standard deviation *100)
Bio5 Max temperature of warmest month
Bio6 Min temperature of coldest month
Bio7 Temperature annual range (Bio5-Bio6)
Bio8 Mean temperature of wettest quarter
Bio9 Mean temperature of driest quarter
Bio10 Mean temperature of warmest quarter
Bio11 Mean temperature of coldest quarter
Bio12 Annual precipitation
Bio13 Precipitation of wettest month
Bio14 Precipitation of driest month
Bio15 Precipitation seasonality (coefficient of variation)
Bio16 Precipitation of wettest quarter
Bio17 Precipitation of driest quarter
Bio18 Precipitation of warmest quarter
Bio19 Precipitation of coldest quarter
Tab. 2.

Kruskal-Wallis one-way analysis of variance test for the environmental variables across different species. Underlined P values are significant after Bonferroni correction.

Environmental variables K P
Latitude 57.6771 <0.0001
Longitude 18.0821 0.0797
Altitude 44.8522 <0.0001
Bio1 50.1070 <0.0001
Bio2 26.4818 0.0055
Bio3 48.3185 <0.0001
Bio4 50.2673 <0.0001
Bio5 45.4429 <0.0001
Bio6 62.5901 <0.0001
Bio7 37.2495 0.0001
Bio8 39.9302 <0.0001
Bio9 46.2505 <0.0001
Bio10 45.3273 <0.0001
Bio11 63.4260 <0.0001
Bio12 25.4819 0.0077
Bio13 21.8519 0.0255
Bio14 13.7414 0.2476
Bio15 21.0657 0.0327
Bio16 22.0630 0.0239
Bio17 14.5532 0.2039
Bio18 13.0524 0.2899
Bio19 28.8192 0.0024
Tab. 3.

List of species reported from the Indian subcontinent along with ranges of annual mean temperatures of their respective localities. See literature sources in Supplementary Tab. 1.

Species Annual mean Temperature range (°C)
Daphnia (Ctenodaphnia) carinata King, 1853 s.l. -6.8 to 29.1
Daphnia (Ctenodaphnia) cephalata King, 1853 s.l. 22.3 to 28.8
Daphnia (Ctenodaphnia) fusca Gurney, 1906 -1.1 to 26.7
Daphnia (Ctenodaphnia) lumholtzi Sars, 1885 15.3 to 27.3
Daphnia (Ctenodaphnia) magna Straus, 1820 11.7 to 28.6
Daphnia (Ctenodaphnia) similis Claus, 1876 24.1 to 25.8
Daphnia (Ctenodaphnia) similoides Hudec, 1991 15.8 to 27
Daphnia (Ctenodaphnia) tibetana (Sars, 1903) -3.8 to 8.7
Daphnia (Daphnia) dentifera Forbes, 1893 -1.3
Daphnia (Daphnia) longispina (O.F. Müller, 1776) s.l. 4.9 to 28
Daphnia (Daphnia) obtusa Kurz, 1874 emend. Scourfield, 1942 s.l. 13.7 and 15.2
Daphnia (Daphnia) pulex Leydig, 1860 s. l. -3.8 to 26.7
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